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Biodiversity
Species richness varies by orders of magnitude across the globe and so does the richness of endangered species. We are interested in both the macroecological processes causing richness patterns, and the socioeconomic processes determining where biodiversity is threatened.
The Impact of Phenological Variation on Texture Measures of Remotely Sensed Imagery
Measures of image texture derived from remotely sensed imagery have proven useful in many applications. However, when using multitemporal imagery or multiple images to cover a large study area, it is important to understand how image texture measures are affected by surface phenology. Our goal was to characterize the robustness to phenological variation of common first- and second-order texture measures of satellite imagery. Three North American study sites were chosen to represent different biomes. At each site, a suite of image textures were calculated for three to four dates across the growing season. Texture measures were compared among dates to quantify their stability, and the stability of measures was also compared between biomes. Interseasonal variability of texture measures was high overall indicating that care must be taken when using measures of texture at different phenological stages. Certain texture measures, such as first-order mean and entropy, as well as second-order homogeneity, entropy, and dissimilarity, were more robust to phenological change than other measures
File: Culbert_etal_IEEE_JSTARS_2010_0.pdfThis is a publication uploaded with a php script
Remote sensing of vegetation 3-D structure for biodiversity and habitat: Review and implications for lidar and radar spaceborne missions
Biodiversity and habitat face increasing pressures due to human and natural influences that alter vegetation structure. Because of the inherent difficulty of measuring forested vegetation three-dimensional (3-D) structure on the ground, this important component of biodiversity and habitat has been, until recently, largely restricted to local measurements, or at larger scales to generalizations. New lidar and radar remote sensing instruments such as those proposed for spaceborne missions will provide the capability to fill this gap. This paper reviews the state of the art for incorporating information on vegetation 3-D structure into biodiversity and habitat science and management approaches, with emphasis on use of lidar and radar data. First we review relationships between vegetation 3-D structure, biodiversity and habitat, and metrics commonly used to describe those relationships. Next, we review the technical capabilities of new lidar and radar sensors and their application to biodiversity and habitat studies to date. We then define variables that have been identified as both useful and feasible to retrieve from spaceborne lidar and radar observations and provide their accuracy and precision requirements. We conclude with a brief discussion of implications for spaceborne missions and research programs. The possibility to derive vegetation 3-D measurements from spaceborne active sensors and to integrate them into science and management comes at a critical juncture for global biodiversity conservation and opens new possibilities for advanced scientific analysis of habitat and biodiversity.
File: Bergen_etal_JGR_2010_0.pdfThis is a publication uploaded with a php script
Response of Avian Communities to Historic Habitat Change in the Northern Chihuahuan Desert
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Satellite image texture and a vegetation index predict avian biodiversity in the Chihuahuan Desert of New Mexico.
Predicting broad-scale patterns of biodiversity is challenging, particularly in ecosystems where traditional methods of quantifying habitat structure fail to capture subtle but potentially important variation within habitat types. With the unprecedented rate at which global biodiversity is declining, there is a strong need for improvement in methods for discerning broad-scale differences in habitat quality. Here, we test the importance of habitat structure (i.e. fine-scale spatial variability in plant growth forms) and plant productivity (i.e. amount of green biomass) for predicting avian biodiversity. We used image texture (i.e. a surrogate for habitat structure) and vegetation indices (i.e. surrogates for plant productivity) derived from Landsat Thematic Mapper (TM) data for predicting bird species richness patterns in the northern Chihuahuan Desert of New Mexico. Bird species richness was summarized for forty-two 108 ha plots in the McGregor Range of Fort Bliss Military Reserve between 1996 and 1998. Six Landsat TM bands and the normalized difference vegetation index (NDVI) were used to calculate first-order and second-order image texture measures. The relationship between bird species richness versus image texture and productivity (mean NDVI) was assessed using Bayesian model averaging. The predictive ability of the models was evaluated using leave-one-out cross-validation. Texture of NDVI predicted bird species richness better than texture of individual Landsat TM bands and accounted for up to 82.3% of the variability in species richness. Combining habitat structure and productivity measures accounted for up to 87.4% of the variability in bird species richness. Our results highlight that texture measures from Landsat TM imagery were useful for predicting patterns of bird species richness in semi-arid ecosystems and that image texture is a promising tool when assessing broad-scale patterns of biodiversity using remotely sensed data.
File: StLouis_2009_Ecography.pdfThis is a publication uploaded with a php script
Landscape-scale patterns of black-throated sparrow (Amphispiza bilineata) abundance and nest success
Analyses of avian demographic patterns across entire, contiguous landscapes are rare, but such analyses are important for understanding population dynamics. We selected the Black-throated Sparrow in the northern Chihuahuan Desert as a model to test patterns of abundance and nest success across a landscape. We integrated abundance, nest density, and nesting success measured on sampling plots with a classified satellite map of the distribution of seven habitat types to analyze spatial and temporal patterns contributing to the population dynamics of this species. Adult relative abundance ranged from ,1 bird/100 ha in pinyon-juniper habitat to 24- 39 birds/100 ha in shrubland habitats. Nest density was consistently high in mesquite, moderate to high in creosotebush, and low in black grama grassland; this value exhibited more temporal variability than relative abundance of adults. Nest success rates exhibited a strong habitat effect and ranged from 8% in mesquite to 47% in black grama grassland; overall population nest success was 0.266. In all three years, nest success in mesquite was significantly lower than in all other habitat types (P , 0.01). There was no correlation between nest success and adult relative abundance. While mesquite habitat contained about one-third of all adults in the three years of the study, it contributed as little as 10% of successful nests. In creosotebush, the relative contribution to both adult abundance and successful nests was relatively high. Mesa grassland contained relatively few adults, but up to 44% of successful nests. We discuss how habitat selection theory suggests mechanisms for the observed patterns. Mesquite appears to be a population sink for Black-throated Sparrows and may be an ecological trap. While we do not propose that there is cause for conservation concern for this widespread species, our results underscore the pitfalls associated with using adult abundance as an indicator of habitat quality. The method presented here is applicable for many species and ecosystems and, thus, may be an important tool for conservation and management, as well as a new avenue for scientific investigation of landscape-level population dynamics.
File: Pidgeon_etal_EA2003.pdfThis is a publication uploaded with a php script
Phenological differences in tasseled cap indices improve deciduous forest classification
Remote sensing needs to clarify the strengths of different methods so they can be consistently applied in forest management and ecology. Both the use of phenological information in satellite imagery and the use of vegetation indices have independently improved classifications of north temperate forests. Combining these sources of information in change detection has been effective for land cover classifications at the continental scale based on Advanced Very High Resolution Radiometer (AVHRR) imagery. Our objective is to test if using vegetation indices and change analysis of multiseasonal imagery can also improve the classification accuracy of deciduous forests at the landscape scale. We used Landsat Thematic Mapper (TM) scenes that corresponded to Populus spp. leaf-on and Quercus spp. leaf-off (May), peak summer (August), Acer spp. peak color (September), Acer spp. and Populus spp. leaf-off (October). Input data files derived from the imagery were: (1) TM Bands 3, 4, and 5 from all dates; (2) Normalized Difference Vegetation Index (NDVI) from all dates; (3) Tasseled Cap brightness, greenness, and wetness (BGW) from all dates; (4) difference in TM Bands 3, 4, and 5 from one date to the next; (5) difference in NDVI from one date to the next; and (6) difference in BGW from one date to the next. The overall kappa statistics (KHAT) for the aforementioned classifications of deciduous genera were 0.48, 0.36, 0.33, 0.38, 0.26, 0.43, respectively. The highest accuracies occurred from TM Bands 3, 4, and 5 (61.0% for deciduous genera, 67.8% for all classes) or from the difference in BGW (61.0% for deciduous genera, 67.8% for all classes). However, the difference in Tasseled Cap classification more accurately separated deciduous shrubs and harvested stands from closed canopy forest. Our results indicate that phenological change of forest is most accurately captured by combining image differencing and Tasseled Cap indices.
File: Dymond_etal_RSE2002.pdfThis is a publication uploaded with a php script
Integrating Landscape and Metapopulation Modeling Approaches: Viability of the Sharp-Tailed Grouse in a Dynamic Landscape
The lack of management experience at the landscape scale and the limited feasibility of experiment at this scale have increased the use of scenario modeling to analyze the effects of different management actions on focal species. However, current modeling approaches are poorly suited for the analysis of viability in dynamic landscapes. Demographic (e.g., metapopulation) models of species living in these landscapes do not incorporate the variability in spatial patterns of early successional habitats, and landscape models have not been linked to population viability models. We link a landscape model to a metapopulation model and demonstrate the use of this model by analyzing the effect of forest management options on the viability of the Sharp-tailed Grouse ( Tympanuchus phasianellus) in the Pine Barrens region of northwestern Wisconsin (U.S.A.). This approach allows viability analysis based on landscape dynamics brought about by processes such as succession, disturbances, and silviculture. The landscape component of the model (LANDIS) predicts forest landscape dynamics in the form of a time series of raster maps. We combined these maps into a time series of patch structures, which formed the dynamic spatial structure of the metapopulation component (RAMAS). Our results showed that the viability of Sharp-tailed Grouse was sensitive to landscape dynamics and demographic variables such as fecundity and mortality. Ignoring the landscape dynamics gave overly optimistic results, and results based only on landscape dynamics (ignoring demography) lead to a different ranking of the management options than the ranking based on the more realistic model incorporating both landscape and demographic dynamics. Thus, models of species in dynamic landscapes must consider habitat and population dynamics simultaneously.
File: Akcakaya_etal_ConsBio2004.pdfThis is a publication uploaded with a php script
Habitat and population modelling of Roe Deer using an interactive Geographic Information System
Management of German roe deer (Capreolus capreolus) populations is a challenge for wildlife managers and foresters because population densities are difficult to estimate in forests and forest regeneration can be negatively affected when roe deer density is high. We describe a model to determine deer population densities compatible with forest management goals, and to assess harvest rates necessary to maintain desired deer densities. A geographic information system (GIS) was used to model wildlife habitat and population dynamics over time. Our model interactively incorporates knowledge of ?eld biologists and foresters via a graphical user interface (GUI). Calibration of the model with deer damage maps allowed us to evaluate density dependence of a roe deer population. Incorporation of local knowledge into temporally dynamic and spatial models increases understanding of population dynamics and improves wildlife management.
File: Radeloff_etal_EM1999.pdfThis is a publication uploaded with a php script
Contrasting measures of fitness to classify habitat quality for the Black-throated Sparrow (Amphispiza bilineata)
Habitat quality is an important consideration when identifying source and sink habitat and setting priority areas for avian conservation. The problem is that different measures may lead to different conclusions about habitat quality, and may also vary in the resources required to estimate them. Individual level measures, such as nest success, and fecundity, will often identify different high quality habitats than population level measures, such as abundance or the number of fledglings produced per unit area. We tested measures of fitness in the Black-throated Sparrow both at the individual and at the population level for six habitats in the northern Chihuahuan Desert, to explore their value as indicators of habitat quality. We compared clutch size, number of nestlings per nest, number of fledglings per successful nest, nest density, nest success, daily nest survival rate, season-long fecundity, number of fledglings produced per 100 ha, and adult abundance, in each habitat type. We also modeled source-sink dynamics to estimate the scale at which they operate, to infer survival rates, and to ascertain the relative source potential of each habitat. We found that fecundity is the best indicator of individual level habitat quality but a poor indicator of population level habitat quality. Nest success (or fecundity, if resources are available to adequately estimate it) plus nest density provide the most robust indicator of population level habitat quality, which is the level at which priority habitats for conservation should be identified. Mesa grassland and black grama grassland functioned as source habitats most consistently, and mesquite was consistently a sink but also probably a reservoir of individuals available to occupy other habitats.
File: Pidgeon_etal_BioCons_2006.pdfThis is a publication uploaded with a php script